EVA: evaluation of protein structure prediction servers
نویسندگان
چکیده
منابع مشابه
EVA: evaluation of protein structure prediction servers
EVA (http://cubic.bioc.columbia.edu/eva/) is a web server for evaluation of the accuracy of automated protein structure prediction methods. The evaluation is updated automatically each week, to cope with the large number of existing prediction servers and the constant changes in the prediction methods. EVA currently assesses servers for secondary structure prediction, contact prediction, compar...
متن کاملEVA: continuous automatic evaluation of protein structure prediction servers
UNLABELLED Evaluation of protein structure prediction methods is difficult and time-consuming. Here, we describe EVA, a web server for assessing protein structure prediction methods, in an automated, continuous and large-scale fashion. Currently, EVA evaluates the performance of a variety of prediction methods available through the internet. Every week, the sequences of the latest experimentall...
متن کاملServers for protein structure prediction.
The 1990s cultivated a generation of protein structure human predictors. As a result of structural genomics and genome sequencing projects, and significant improvements in the performance of protein structure prediction methods, a generation of automated servers has evolved in the past few years. Servers for close and distant homology modeling are now routinely used by many biologists, and have...
متن کاملLiveBench-1: continuous benchmarking of protein structure prediction servers.
We present a novel, continuous approach aimed at the large-scale assessment of the performance of available fold-recognition servers. Six popular servers were investigated: PDB-Blast, FFAS, T98-lib, GenTHREADER, 3D-PSSM, and INBGU. The assessment was conducted using as prediction targets a large number of selected protein structures released from October 1999 to April 2000. A target was selecte...
متن کاملEvaluation of currently available web-servers for 3D-structure based prediction of protein interface regions
Many important problems in molecular biology today involve characterizing protein interaction networks. There are numerous experimental approaches to this problem, ranging from narrow, focused biochemical analysis of direct physical interactions, to broader approaches like yeast two hybrid and mass spec; direct observation of an interface with a 3D crystal structure is the gold standard, but is...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Nucleic Acids Research
سال: 2003
ISSN: 1362-4962
DOI: 10.1093/nar/gkg619